Summer 2018

Greetings from Proteome Software!

Our User Group meeting will take place on June 3, 2018 at the San Diego Kimpton Hotel
Please join us at ASMS booth 301 in June.
Scaffold DIA is now available on our website for evaluation.
Read on for a roundup of new features implemented in PS products.
Scaffold was used in our featured publication this quarter published in Molecular and Cellular Endocrinology.

User Group at ASMS 2018

Our User Group meeting will take place on Sunday, June 3 at the Kimpton Solamar Hotel in San Diego, CA from 2:00 PM to 5:00 PM. Susan T. Weintraub of the UTHSCSA will give a presentation on Practical Considerations for DIA Proteomics.

Attendees will hear news about development, learn more about the use of our products and have the option to provide feedback on features you would like to see implemented in future versions. Everyone is welcome and refreshments will be served. Click on the button below to register.

Conference News

Thanks to all who stopped by our booths at US HUPO and ABRF earlier this year. We were excited to unveil Scaffold DIA, attend interesting lectures and meet with people face to face.

Proteome Software will have a booth at ASMS this year from June 3-7, 2018 in sunny San Diego, California. Visit us at booth 301 to learn more about Scaffold, Elements and all of our exciting programs.

Finally in conference news, Proteome Software will have a presence at the World HUPO conference in Orlando, Florida from Sept. 30 to Oct. 3. More details to follow.

Scaffold DIA

Scaffold DIA was officially released in March 2018. Current Scaffold users should be familiar with its intuitive user interface and robust feature set.

Are you interested in exploring data independent acquisition? Request a free evaluation and try the program for 14-days in your laboratory. We have documentation that will assist with defining instrument parameters for those new to DIA. Chances are the instrument you currently use can collect DIA data.

DIA is gaining popularity due to increased proteomic coverage and more accurate quantitative values. Now is the time to try out DIA for yourself!

Request an Evaluation

Feature Highlights

Exciting new features include:

A BLIB spectral library export for Scaffold DIA and Skyline (Scaffold)
Support for TMT 11-plex (Scaffold Q+ & Q+S)
Addition of a volcano plot, by popular demand! (Scaffold Q+ & Q+S)
Support for reading Proteome Discoverer 2.2 files (Scaffold, Q+, Q+S)
The METLIN Library (Scaffold Elements)
Optimizations for the analysis of lipidomics data (Scaffold Elements)

Publication Spotlight

The featured article this quarter used Scaffold in the analysis of pancreatic beta-cells

Nuclear import of glucokinase in pancreatic beta-cells is mediated by a nuclear localization signal and modulated by SUMOylation

Molecular and Cellular Endocrinology (2017)

Bente Berg Johansson, Karianne Fjeld, Marie Holm Solheim, Jun Shirakawa, Enming Zhang, Magdalena Keindl, Jiang Hu, Andreas Lindqvist, Anne Døskeland, Gunnar Mellgren, Torgeir Flatmark, Pål Rasmus Njølstad, Rohit N. Kulkarni, Nils Wierup, Ingvild Aukrust, Lise Bjørkhaug

Read Article

Call for Publications

Have a recent publication that references one of our products? We want to give you the recognition you deserve for your hard work. Send us a email and a bit about your research to have you paper added to our citation list.

Contact information can be sent to sales@proteomesoftware.com.

In Closing...

Check out our website for a wealth of Proteome Software related information including demo data, evaluation request forms and product user guides.