May 2016 - Vol 8, Issue 1
Proteome Software
ASMS 2016 San Antonio, TX
To view this newsletter on the web, click here.
We hope you will join us at ASMS next month in San Antonio. You can find us at Booth #322 in the exhibition hall and on Sunday, June 5th, at noon, at our Users Group Meeting in Room 005. For more information and to register, click here.
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From the Rose City to the Rose Window of San Antonio... Sculpted in 1775, La Ventana de Rosa is considered to be one of the finest examples of baroque architecture in North America. And, like Pedro Huizar who sculpted the Rose Window, Proteome Software designs its software for beautiful results. |
Posters of Interest at ASMS 2016:
Monday, June 6
MP 699 Exercise-Induced Protein Secretion from Muscle; You Zhou; Ji Li; Sammy Pardo; Dana Molleur; Caleb Emmons; Susan T Weintraub; Nicolas Musi
Wednesday, June 8
WP 097 Quantitative Profiling of Hypoxia-responsive Cellular Pathways Associated with Metastasis in Osteosarcoma by Parallel Reaction Monitoring Assay; Zifeng Song; Liping Yang; Luisa Zini; Caleb Emmons; Siva Kolluri; Millan Shay; Milan Milovancev; Claudia S Maier
MP 257 Utilizing Advanced Multivariate Analysis Features with Automated Database Searching Algorithms to Simplify Metabolomics Study Conduct and Understanding; Christopher Colangelo; Phillip Seitzer; Rick Schneider
WP 372 An Adjusted-Median Approach to Missing Values in Label Free Quantitation; Seth Just1; Luisa Zini; Nick Vincent-Maloney; Brian C Searle
WP 554 Comprehensive HPLC-MS Metabolomics Analysis of Brain Tissue Reveals Age, Region, and Gender-Specific Effects of Centella asiatica; Parnian Lak; Nora Gray; Luisa Zini; Phillip Seitzer; Christopher Harris; Joseph Quinn; Amala Soumyanath2; Jan Fred Stevens1; Claudia Maier
WP 572 Identification of Eicosanoids Mediating Thromboresistance using an Untargeted Metabolomics and Informatics Approach; Patrizia B Stadler; Shunyan Mo; Phillip Seitzer; Christopher M Colangelo; Jeffrey J Rade; Scott A Shaffer
Brian Searle Oral Session on INFORMATICS: TARGETED PROTEOMICS AND DIA
8:30 am THURSDAY, Hemisfair Ballroom 3, level 3, Brian Searle EncyclopeDIA: a New Algorithmic Approach to Detect, Site-Localize, And Quantify Phosphopeptide Positional Isomers from DIA Experiments; Brian C. Searle; Robert T Lawrence; Michael J MacCoss; Judit Villén
Product News: What’s New
Scaffold PTM 3.0
- Volcano Plot
- Label Free Quantitation
- Normalization of Site Quantitation by Protein Expression
Click here
for more details on What’s New in Scaffold PTM
Click here
to download Scaffold PTM
Scaffold Q+ and Q+S 4.5
- New Experimental Design Wizard
- Display P-value and Fold-change Side-by-Side
- Separate Reference Alignment Groups within a Sample
- Statistical Support for Time-course and other Experiment Types
Click here
for more details on What’s New
Click here
for Experimental Design Brochure
Click here
to download Scaffold Q+S
Elements for Metabolomics 1.2
Our new Elements software for untargeted LC/MS metabolomics provides multidimensional search and scoring algorithms for superior metabolite IDs based on MS1, MS2 and RT. You can utilize powerful statistics at any desired level of summarization, track changing metabolites with ease, and visualize and share your experiments with our free Viewer.
- Improved Scoring Algorithm
- 3D Interactive Feature Viewer
- Improved Peak Picking for both Profile and Centroided Data Acquisition Modes
Click here
for more details
Click here
to download Elements
Product News: Coming Soon
Scaffold
- Display gene IDs
- Enhanced performance
- Apply multiple fasta files to a single sample
- Load separate samples from a single Proteome Discoverer file
Scaffold Q+
- Support MS3 quantitation for iTRAQ and TMT
Scaffold Batch
- FDR Thresholds
- Full support for Scaffold Q+
- New Batch features and guidelines for ease of implementation and Batch integration
Elements
- Improved performance
- Support for Waters MSe data
- 3D viewing from METDB file
Do you have a publication that cites Scaffold or Elements? Let us know! We will post a citation about your publication on our website and spread the word about your great work. Send us an email to EMAIL ADDRESS with the details.
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Proteome Software, Inc
1340 SW Bertha Blvd, Suite 10
Portland, OR 97219
Toll-Free (800) 944-6027